gendata.core

A module containing functions and classes to facilitate the importing of genetic data.

Functions

elementwise_isin(array[, match_list])	Apply an isin operation elementwise for an array with respect to a list.
merge(*genotype_data)	Merge sets of genotype data for different chromosomes/loci from the same set of samples.
read_bed(paths[, rsids, individuals, ...])	Read raw genotypes into an annotated data frame.

Classes

AbstractGenoData(genotypes, snps, samples)	An abstract class for other genotype data classes to be based on.
IntGenoData(genotypes, snps, samples)	A class to hold and perform basic operations on integer genotype data.
StdGenoData(genotypes, snps, samples)	A class to hold and perform operations on standardised genotype data.